Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Kidney
Cell type
Nephrons
MeSH Description
The functional units of the kidney, consisting of the glomerulus and the attached tubule.

Attributes by original data submitter

Sample

sample type
organoid
tissue
nephron
sex
female
health state
healthy
dev stage
embryonic
age
5 day
donor ID
ENCDO222AAA
lab
Bradley Bernstein, Broad
source
Joseph Bonventre

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
29248583
Reads aligned (%)
98.6
Duplicates removed (%)
7.4
Number of peaks
33847 (qval < 1E-05)

hg19

Number of total reads
29248583
Reads aligned (%)
97.8
Duplicates removed (%)
8.3
Number of peaks
33667 (qval < 1E-05)

Base call quality data from DBCLS SRA