Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Kidney

Cell type

Nephrons

MeSH Description

The functional units of the kidney, consisting of the glomerulus and the attached tubule.

Sample

sample type

organoid

tissue

nephron

sex

female

health state

healthy

dev stage

embryonic

age

5 day

donor ID

ENCDO222AAA

lab

Bradley Bernstein, Broad

source

Joseph Bonventre

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

29248583

Reads aligned (%)

98.6

Duplicates removed (%)

7.4

Number of peaks

33847 (qval < 1E-05)

hg19

Number of total reads

29248583

Reads aligned (%)

97.8

Duplicates removed (%)

8.3

Number of peaks

33667 (qval < 1E-05)